The oligosaccharide β-d-Galf-(1→3)-α-d-Manp-(1→2)-[β-d-Galf-(1→3)]-α-d-Manp-(1→2)-α-d-Manp corresponds to the terminal end of the glycosylinositolphospholipid oligosaccharide of the protozoan Trypanosomacruzi, the causative agent of Chagas’ disease. Syntheses of methyl or ethylthio glycosides of the terminal disaccharide, trisaccharide, tetrasaccharide, and pentasaccharide corresponding to this structure are described. These syntheses employ the selective activation of a phenyl 1-selenogalactofuranoside or a phenyl 1-selenomannopyranoside donor over ethyl 1-thioglycoside acceptors with NIS–TfOH., Peer-reviewed article, Published. Received 8 December 1999; Accepted 14 December 1999; Available online 19 April 2000.
Proceedings from the 23rd Annual ACM Conference on Innovation and Technology in Computer Science Education. Since computing education began, we have sought to learn why students struggle in computer science and how to identify these at-risk students as early as possible. Due to the increasing availability of instrumented coding tools in introductory CS courses, the amount of direct observational data of student working patterns has increased significantly in the past decade, leading to a flurry of attempts to identify at-risk students using data mining techniques on code artifacts. The goal of this work is to produce a systematic literature review to describe the breadth of work being done on the identification of at-risk students in computing courses. In addition to the review itself, which will summarize key areas of work being completed in the field, we will present a taxonomy (based on data sources, methods, and contexts) to classify work in the area., Peer reviewed, Conference paper, Published.
Understanding temperature and airflow patterns in an attic roof helps to identify the sections of the roof where moisture damage and roofing material durability problems can be expected. In this paper, the temperature distribution and the airflow patterns inside an attic space in a climate that can be characterized with cold winter and hot summer periods are discussed. In the study, transient boundary conditions were applied, and the dynamic responses of a typical attic roof, including the flow patterns, attic air and roof sheathing temperatures, ventilation rates, and heating and cooling loads, are presented. These findings can be used to understand the airflow pattern and how it can be affected by an incoming wind speed and solar gain., Peer reviewed article, Published. Received: September 14, 2016; Accepted: March 08, 2017; Published online: June 22, 2017.
14th Canadian Conference on Building Science and Technology, Toronto, Canada, October 29th-30th, 2014.
It is essential to design and operate buildings with good indoor air quality as people spend most of their time indoor. Their productivity, comfort and health depend on the quality of the indoor air. In addition to other air quality parameters, indoor humidity and temperature need to be controlled and maintained to acceptable ranges. These conditions may not be uniform within the house/building due to local heat and moisture sources and absence of an effective indoor air mixing mechanism as in the case of in buildings with baseboard heating systems. Localized high humidity creates favourable conditions for localized mold growth, poor indoor air quality and building envelope damage. In this paper, the indoor humidity and temperature distributions within four suites (designated as Suite ‘A’, ‘B’, ‘C’ and ‘D’) in a six-storey multi-residential building are studied. A total of 22 rooms are monitored with indoor temperature and relative humidity data loggers, and the outdoor climatic conditions are measured with a weather station for over a year. The hygrothermal performances of exterior walls in the master bedrooms of the respective suites are assessed. Analysis of the measured data suggests that the temperature variations between the rooms (bedrooms, living room, kitchen excluding bathroom) are relatively low during the summer period (mean temperature difference less than 1oC) compared to the winter period where the variations between the rooms can be as high as 2oC. The excess humidity differences between the rooms, excluding the kitchens, are in the range of 0.2 g/m 3 to 1.0 g/m 3 during both winter and summer periods, whereas the excess humidity fluctuations within the rooms are fairly the same and have standard deviation values between 0.8 g/m 3 and 1.0 g/m 3. Excess humidity is defined as the difference between the indoor and outdoor absolute humidities, quantities that
are derived from the simultaneously measured temperature and relative humidity of the indoor and outdoor locations. Hygrothermal simulation results of exterior wall systems indicate that, in a mild coastal climate, the winter average indoor relative humidity shall be below 43% (for a seasonal average indoor temperature of 20oC) to avoid building envelope moisture damage., Peer reviewed article, Published.
Meeting and exceeding requirements for indoor air quality, thermal comfort, and acoustic and visual quality can lead to optimized environments that maximize well-being and performance. However, surveys on numerous buildings have revealed that satisfactory indoor environmental conditions are often not achieved. This suggests the whole industry needs more systematic methods to analyze and design indoor environments., Peer reviewed, Technical feature, Published 2018., Thermal comfort, Thermal environmental quality, ASHRAE Standard 55-2017
Proceedings of Building Physics Symposium: 29 October 2008, Leuven, Belgium.
This paper describes the use of a whole building hygrothermal model (HAMFitPlus) to analyze the energy savings resulting from three programmable thermostat setting schemes in a real occupied residential house. It discusses the effect of these schemes on the indoor relative humidity and moisture performance. In the first thermostat-setting scheme, the indoor temperature is maintained constant at 21 at all time (no set-back). In the second thermostat-setting scheme, the indoor temperature is maintained at 21ºC from 7:00 to 21:00 h, and then setback to 17ºC for the remaining hours (21:00 to 7:00 h)., Conference paper, Published. A version of this document is published in: Building Physics Symposium, Lueven, Belgium, October 29-31, 2008, pp. 1-5.
Anterior-posterior (AP) body segmentation of the fruit fly (Drosophila) is first seen in the 7-stripe spatial expression patterns of the pair-rule genes, which regulate downstream genes determining specific segment identities. Regulation of pair-rule expression has been extensively studied for the even-skipped (eve) gene. Recent live imaging, of a reporter for the 2nd eve stripe, has demonstrated the stochastic nature of this process, with ‘bursts’ in the number of RNA transcripts being made over time. We developed a stochastic model of the spatial and temporal expression of eve stripe 2 (binding by transcriptional activators (Bicoid and Hunchback proteins) and repressors (Giant and Krüppel proteins), transcriptional initiation and termination; with all rate parameters constrained by features of the experimental data) in order to analyze the noisy experimental time series and test hypotheses for how eve transcription is regulated. These include whether eve transcription is simply OFF or ON, with a single ON rate, or whether it proceeds by a more complex mechanism, with multiple ON rates. We find that both mechanisms can produce long (multi-minute) RNA bursts, but that the short-time (minute-to-minute) statistics of the data is indicative of eve being transcribed with at least two distinct ON rates, consistent with data on the joint activation of eve by Bicoid and Hunchback. We also predict distinct statistical signatures for cases in which eve is repressed (e.g. along the edges of the stripe) vs. cases in which activation is reduced (e.g. by mutagenesis of transcription factor binding sites). Fundamental developmental processes such as gene transcription are intrinsically noisy; our approach presents a new way to quantify and analyze time series data during developmental patterning in order to understand regulatory mechanisms and how they propagate noise and impact embryonic robustness., Peer-reviewed article, Published. Received: November 21, 2016; Accepted: April 8, 2017; Published: April 24, 2017.
Most building materials are porous, composed of solid matrix and pores. The time varying indoor and outdoor climatic conditions result heat, air and moisture (HAM) transfer across building enclosures. In this paper, a transient model that solves the coupled heat, air and moisture transfer through multilayered porous media is developed and benchmarked using internationally published analytical, numerical and experimental test cases. The good agreements obtained with the respective test cases suggest that the model can be used to assess the hygrothermal performance of building envelope components as well as to simulate the dynamic moisture absorption and release of moisture buffering materials., Peer reviewed article, Published. Received 26 February 2009, Revised 30 September 2009, Accepted 1 October 2009, Available online 13 April 2010.
Douglas-fir heartwood thermomechanical pulp was treated with laccase enzymes at 25 and 50°C with and without added oxygen. The treated pulps were cleached with hudrogen peroxide at increasing alkali charges. Laccase treatments without added oxygen increased bleached brightness by 1.5-2.5 pts ISO, and decreased hydrogen peroxide consumption by 15-20%. The enzyme treatments were not enhanced when supplemented with oxygen. When the effectiveness of four different laccase enzymes was compared for the treatment of Douglas-fir heartwood thermomechanical pulp, there were no significant differences found in the performance among the enzymes. Possible explanations for the observed results are given., Peer-reviewed article, Published.
Belief revision is concerned with incorporating new information into a pre-existing set of beliefs. When the new information comes from another agent, we must first determine if that agent should be trusted. In this paper, we define trust as a pre-processing step before revision. We emphasize that trust in an agent is often restricted to a particular domain of expertise. We demonstrate that this form of trust can be captured by associating a state partition with each agent, then relativizing all reports to this partition before revising. We position the resulting family of trust-sensitive revision operators within the class of selective revision operators of Ferme and Hansson, and we prove a representation result that characterizes the class of trust-sensitive revision operators in terms of a set of postulates. We also show that trust-sensitive revision is manipulable, in the sense that agents can sometimes have incentive to pass on misleading information., Article, Published.
Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence in Buenos Aires, Argentina, 25–31 July 2015. Belief revision is concerned with incorporating new information into a pre-existing set of beliefs. When the new information comes from another agent, we must first determine if that agent should be trusted. In this paper, we define trust as a pre-processing step before revision. We emphasize that trust in an agent is often restricted to a particular domain of expertise. We demonstrate that this form of trust can be captured by associating a state partition with each agent, then relativizing all reports to this partition before revising. We position the resulting family of trust-sensitive revision operators within the class of selective revision operators of Ferme and Hansson, and we examine its properties. In particular, we show how trust-sensitive revision is manipulable, in the sense that agents can sometimes have incentive to pass on misleading information. When multiple reporting agents are involved, we use a distance function over states to represent differing degrees of trust; this ensures that the most trusted reports will be believed., Conference paper, Published.
This paper presents an analysis of a phenomenon known as "The Relative Age" effect. When assessing the innate ability (or talent) of individual children who are grouped into age cohorts, systematic errors occur due to differences in biological maturity. A structural model of a multi-period progression through levels (or grades) that employs screening and selection is developed. Through a series of simulations, impact of the relative age on the of selection process is analyzed., Thesis, Draft published.
As the world urbanizes, the role of cities in determining sustainability outcomes grows in importance. Cities are the dominant form of human habitat, and most of the world's resources are either directly or indirectly consumed in cities. Sustainable city analysis and management requires understanding the demands a city places on a wider geographical area and its ecological resource base. We present a detailed, integrated urban metabolism of residential consumption and ecological footprint analysis of the Vancouver metropolitan region for the year 2006. Our overall goal is to demonstrate the application of a bottom-up ecological footprint analysis using an urban metabolism framework at a metropolitan, regional scale. Our specific objectives are: a) to quantify energy and material consumption using locally generated data and b) to relate these data to global ecological carrying capacity. Although water is the largest material flow through Metro Vancouver (424,860,000 m3), it has the smallest ecological footprint (23,100 gha). Food (2,636,850 tonnes) contributes the largest component to the ecological footprint (4,514,400 gha) which includes crop and grazing land as well as carbon sinks required to sequester emissions from food production and distribution. Transportation fuels (3,339,000 m3) associated with motor vehicle operation and passenger air travel comprises the second largest material flow through the region and the largest source of carbon dioxide emissions (7,577,000 tonnes). Transportation also accounts for the second largest component of the EF (2,323,200 gha). Buildings account for the largest electricity flow (17,515,150 MWh) and constitute the third largest component of the EF (1,779,240 gha). Consumables (2,400,000 tonnes) comprise the fourth largest component of the EF (1,414,440 gha). Metro Vancouver's total Ecological Footprint in 2006 was 10,071,670 gha, an area approximately 36 times larger than the region itself. The EFA reveals that cropland and carbon sinks (forested land required to sequester carbon dioxide emissions) account for 90% of Metro Vancouver's overall demand for biocapacity. The per capita ecological footprint is 4.76 gha, nearly three times the per capita global supply of biocapacity. Note that this value excludes national government services that operate outside the region and could account for up to an additional 2 gha/ca., Peer-reviewed article, Published. Received 23 December 2011; Revised 25 February 2013; Accepted 5 March 2013; Available online 19 April 2013.
This chapter surveys recent developments in simulating the evolution of GRNs in developmental biology. Over the past two decades, computational biologists have developed a number of approaches to study how developmental GRNs evolve. This has led to a number of breakthroughs in understanding the mechanisms of how species maintain their body plans, and how they evolve or speciate in response to environmental perturbations. EA uses the general evolutionary processes of repeated mutation, reproduction and selection in optimization problems. The progress in computational biology described here has deepened and refined understanding of the biological principles underlying these processes. Our aim is for this chapter to provide some inspiration to computer scientists in EA to incorporate new biologically inspired techniques. We feel this offers a large potential for improving EA efficiency. In turn, computational biology could greatly benefit from EA research, for instance in multi-objective optimization, coding of multiscale problems, and efficiencies in solution techniques. Following a brief survey of the major trends in the computational biology approaches, we discuss the refinements these have made to understanding evolutionary mechanisms. In particular, we discuss the factors affecting GRN evolvability and robustness; the effect different genetic alteration mechanisms (e.g. types of mutation) have on evolutionary speed and robustness; the role of network growth; modelling co-evolution; modelling multi-factor control of gene expression; and applying these techniques to the evolution of GRNs controlling spatially-dependent gene expression (underlying embryonic tissue differentiation). We finish with a brief summary of how these might be incorporated into and improve EA searches., Book chapter, Published.
This paper surveys modeling approaches for studying the evolution of gene regulatory networks (GRNs). Modeling of the design or ‘wiring’ of GRNs has become increasingly common in developmental and medical biology, as a means of quantifying gene–gene interactions, the response to perturbations, and the overall dynamic motifs of networks. Drawing from developments in GRN ‘design’ modeling, a number of groups are now using simulations to study how GRNs evolve, both for comparative genomics and to uncover general principles of evolutionary processes. Such work can generally be termed evolution in silico. Complementary to these biologically-focused approaches, a now well-established field of computer science is Evolutionary Computations (ECs), in which highly efficient optimization techniques are inspired from evolutionary principles. In surveying biological simulation approaches, we discuss the considerations that must be taken with respect to: (a) the precision and completeness of the data (e.g. are the simulations for very close matches to anatomical data, or are they for more general exploration of evolutionary principles); (b) the level of detail to model (we proceed from ‘coarse-grained’ evolution of simple gene-gene interactions to ‘fine-grained’ evolution at the DNA sequence level); (c) to what degree is it important to include the genome’s cellular context; and (d) the efficiency of computation. With respect to the latter, we argue that developments in computer science EC offer the means to perform more complete simulation searches, and will lead to more comprehensive biological predictions., Peer-reviewed article, Published.